- Home
- Quick start guide
- 1. fibertools
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- 1.1. Creating a Fiber-seq BAM
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- 1.1.1. ft predict
- 1.1.2. ft add-nucleosomes
- 1.1.3. ft fire
- 1.2. Extracting from a Fiber-seq BAM
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- 1.2.1. ft extract
- 1.2.2. ft center
- 1.2.3. ft footprint
- 1.2.4. ft pileup
- 1.2.5. ft qc
- 1.3. Help pages for ft subcommands
- 1.4. pyft: Python bindings
- 1.5. Installation
- 2. FIRE
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- 2.1. Running and installing
- 2.2. Outputs
- 2.3. Methods
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- 2.3.1. Training
- 2.3.2. Aggregation and peak calling
- 2.3.3. Identifying haplotype-selective peaks
- 3. Glossary
- 4. Fiber-seq BAM format
- 5. Cite
- 6. Analyses
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- 6.1. ONT Fiber-seq Analysis