Cite

If you use DAF-seq in your research, please cite the following:

Swanson, E. G., Mao, Y., Mallory, B. J., Vollger, M. R., Bohaczuk, S. C., Oliveira, C. B., Lyon, D. B., Ranchalis, J., Parmalee, N. L., Cohen, B. A., Bennett, J. T. & Stergachis, A. B. Mapping single-cell diploid chromatin fiber architectures using DAF-seq. Nature Biotechnology (2025). https://doi.org/10.1038/s41587-025-02914-3

BibTeX

@article{swanson2025dafseq,
  title   = {Mapping single-cell diploid chromatin fiber architectures using {DAF}-seq},
  author  = {Swanson, Elliott G. and Mao, Yizi and Mallory, Benjamin J. and
             Vollger, Mitchell R. and Bohaczuk, Stephanie C. and
             Oliveira, Christopher B. and Lyon, Daniel B. and Ranchalis, Jane and
             Parmalee, Nancy L. and Cohen, Barak A. and Bennett, James T. and
             Stergachis, Andrew B.},
  journal = {Nature Biotechnology},
  year    = {2025},
  doi     = {10.1038/s41587-025-02914-3},
  url     = {https://doi.org/10.1038/s41587-025-02914-3}
}

If you use FiberHMM or FiberBrowser to call footprints in or explore DAF-seq data, please also cite:

Tullius, T. W., Catalano, C., Ranchalis, J., Hu, J., Vollger, M. R., Stergachis, A. B., & Levine, M. S. (2026). FiberBrowser: a unified framework for single-molecule genomics. bioRxiv. https://doi.org/10.64898/2026.10.29.762797

@article{tullius2026fiberbrowser,
  title   = {{FiberBrowser}: a unified framework for single-molecule genomics},
  author  = {Tullius, Thomas W. and Catalano, Christopher and Ranchalis, Jane and
             Hu, Jie and Vollger, Mitchell R. and Stergachis, Andrew B. and
             Levine, Michael S.},
  journal = {bioRxiv},
  year    = {2026},
  doi     = {10.64898/2026.10.29.762797},
  url     = {https://www.biorxiv.org/content/10.64898/2026.10.29.762797v1}
}