Citing FiberHMM

If you use FiberHMM in published work, please cite the software with the version you used (python -c "import fiberhmm; print(fiberhmm.__version__)") and the repository:

@software{fiberhmm,
  title   = {FiberHMM: chromatin footprint calling from single-molecule
             Fiber-seq and DAF-seq data},
  author  = {{FiberHMM Authors}},
  version = {3.0.2},
  year    = {2026},
  url     = {https://github.com/fiberseq/FiberHMM}
}

The repository's CITATION.cff carries the same metadata (GitHub's "Cite this repository").

The citation of the accompanying publication will be added here when it is available.

Please also cite the tools FiberHMM builds on where relevant: fibertools (FIRE, ft) and the Molecular-annotation specification for the MA/AQ tags.